Deaminase-based RNA recording enables high throughput mutational profiling of protein-RNA interactions graphical abstract

Deaminase-based RNA recording enables high throughput mutational profiling of protein-RNA interactions

Bakker RA, Nicholson OB, Park H, Xiao YL, Tang W, Subramaniam AR*, Lapointe CP*

bioRxiv 2025

Decoding post-transcriptional regulatory networks by RNA-linked CRISPR screening in human cells graphical abstract

Decoding post-transcriptional regulatory networks by RNA-linked CRISPR screening in human cells

Nugent PJ, Park H, Yelland JN, Wladyka CL, Sinha S, Chen KY, Quarterman G, Bynum C, Lee SC, Hsieh AC, Subramaniam AR*

Nature Methods 2025

Massively parallel identification of sequence motifs triggering ribosome-associated mRNA quality control graphical abstract

Massively parallel identification of sequence motifs triggering ribosome-associated mRNA quality control

Chen KY, Park H, Subramaniam AR*

Nucleic Acids Research 2024

GitHub enables collaborative and reproducible laboratory research graphical abstract

GitHub enables collaborative and reproducible laboratory research

Chen KY, Toro-Moreno M*, Subramaniam AR*

PLoS Biology 2025

Translational buffering by ribosome stalling in upstream open reading frames graphical abstract

Translational buffering by ribosome stalling in upstream open reading frames

Bottorff T, Park H, Geballe AP*, Subramaniam AR*

PLoS Genetics 2022

A nascent peptide code for translational control of mRNA stability in human cells graphical abstract

A nascent peptide code for translational control of mRNA stability in human cells

Burke PC, Park H, Subramaniam AR*

Nature Communications 2022

The serine transporter SdaC prevents cell lysis upon glucose depletion in Escherichia coli graphical abstract

The serine transporter SdaC prevents cell lysis upon glucose depletion in Escherichia coli

Kriner MA, Subramaniam AR*

MicrobiologyOpen 2020

Comprehensive profiling of translation initiation in influenza virus infected cells graphical abstract

Comprehensive profiling of translation initiation in influenza virus infected cells

Machkovech HM, Bloom JD*, Subramaniam AR*

PLoS Pathogens 2019

Inverted translational control of eukaryotic gene expression by ribosome collisions graphical abstract

Inverted translational control of eukaryotic gene expression by ribosome collisions

Park H, Subramaniam AR*

PLoS Biology 2019

Translational control through differential ribosome pausing during amino acid limitation in mammalian cells graphical abstract

Translational control through differential ribosome pausing during amino acid limitation in mammalian cells

Darnell AM, Subramaniam AR*, O'Shea EK*

Molecular Cell 2018

Kinetic modeling predicts a stimulatory role for ribosome collisions at elongation stall sites in bacteria graphical abstract

Kinetic modeling predicts a stimulatory role for ribosome collisions at elongation stall sites in bacteria

Ferrin MF, Subramaniam AR*

eLife 2017

An integrated approach reveals regulatory controls on bacterial translation elongation graphical abstract

An integrated approach reveals regulatory controls on bacterial translation elongation

Subramaniam AR*, Zid B, O'Shea EK*

Cell 2014

A serine sensor for multicellularity in a bacterium graphical abstract

A serine sensor for multicellularity in a bacterium

Subramaniam AR, DeLoughery A, Bradshaw N, Chen Y, O'Shea EK, Losick R*, Chai Y*

eLife 2013

Environmental perturbations lift the degeneracy of the genetic code to regulate protein levels in bacteria graphical abstract

Environmental perturbations lift the degeneracy of the genetic code to regulate protein levels in bacteria

Subramaniam AR, Pan T, Cluzel P*

PNAS 2013

Conformal invariance, multifractality, and finite-size scaling at Anderson localization transitions in two dimensions

Obuse H, Subramaniam AR, Furusaki A, Gruzberg IA, Ludwig AWW

Physical Review B 2010

Entanglement entropy and multifractality at localization transitions

Jia X, Subramaniam AR, Gruzberg IA, Chakravarty S

Physical Review B 2008

Boundary multifractality at the integer quantum Hall plateau transition: implications for the critical theory

Obuse H, Subramaniam AR, Furusaki A, Gruzberg IA, Ludwig AWW

Physical Review Letters 2008

Boundary criticality and multifractality at the 2D spin quantum Hall transition

Subramaniam AR, Gruzberg IA, Ludwig AWW

Physical Review B 2008

Corner multifractality for reflex angles and conformal invariance at 2D Anderson metal-insulator transition with spin-orbit scattering

Obuse H, Subramaniam AR, Furusaki A, Gruzberg IA, Ludwig AWW

Physica E 2008

Boundary multifractality in critical 1D systems with long-range hopping

Mildenberger A, Subramaniam AR, Narayanan R, Evers R, Gruzberg IA, Mirlin AD

Physical Review B 2007

Multifractality and conformal invariance at 2D metal-insulator transition in the spin-orbit symmetry class

Obuse H, Subramaniam AR, Furusaki A, Gruzberg IA, Ludwig AWW

Physical Review Letters 2007

Surface criticality and multifractality at localization transitions

Subramaniam AR, Gruzberg IA, Ludwig AWW, Evers F, Mildenberger A, Mirlin AD

Physical Review Letters 2006